4R7L

Structure of Human Leukotriene A4 Hydrolase in complex with inhibitor H1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.827715% PEG 8000, 0.1mM Na-acetate, 0.1mM Imidazole, 5mM YbCL3, pH 6.8, VAPOR DIFFUSION, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.3647.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.916α = 90
b = 87.134β = 90
c = 99.285γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCD2014-04-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17USSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6630.1999.4476480
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.6630.19

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6630.197605140360.154170.152510.18546RANDOM18.01
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.97
r_dihedral_angle_4_deg16.606
r_dihedral_angle_3_deg11.764
r_dihedral_angle_1_deg6.269
r_long_range_B_refined5.092
r_long_range_B_other5.092
r_scangle_other4.341
r_scbond_it2.984
r_scbond_other2.984
r_angle_refined_deg2.086
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.97
r_dihedral_angle_4_deg16.606
r_dihedral_angle_3_deg11.764
r_dihedral_angle_1_deg6.269
r_long_range_B_refined5.092
r_long_range_B_other5.092
r_scangle_other4.341
r_scbond_it2.984
r_scbond_other2.984
r_angle_refined_deg2.086
r_mcangle_other1.935
r_mcangle_it1.934
r_mcbond_it1.445
r_mcbond_other1.438
r_angle_other_deg0.964
r_chiral_restr0.14
r_bond_refined_d0.021
r_gen_planes_refined0.013
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4852
Nucleic Acid Atoms
Solvent Atoms426
Heterogen Atoms52

Software

Software
Software NamePurpose
HKL-2000data collection
PHASESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling