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Crystal structure of computational designed leucine rich repeats DLRR_K in space group P22121
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 20% PEG 3000, 0.1 M Tris, 0.2 M CalciumAcetate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.14 42.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.868 α = 90 b = 93.369 β = 90 c = 126.237 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD RIGAKU SATURN 70 mirrors 2014-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.7 0.192 8.95 6.2 10761 10729 1 16.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 99.2 0.742 2.32 5.8 1108
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 50 10729 574 99.66 0.2115 0.20752 0.2119 0.28534 0.2878 RANDOM 32.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 1.16 -1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.757 r_dihedral_angle_3_deg 16.942 r_dihedral_angle_4_deg 16.541 r_dihedral_angle_1_deg 6.64 r_long_range_B_refined 2.542 r_long_range_B_other 2.509 r_angle_refined_deg 1.475 r_mcangle_other 1.187 r_mcangle_it 1.186 r_scangle_other 1.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.757 r_dihedral_angle_3_deg 16.942 r_dihedral_angle_4_deg 16.541 r_dihedral_angle_1_deg 6.64 r_long_range_B_refined 2.542 r_long_range_B_other 2.509 r_angle_refined_deg 1.475 r_mcangle_other 1.187 r_mcangle_it 1.186 r_scangle_other 1.185 r_angle_other_deg 0.808 r_mcbond_it 0.679 r_mcbond_other 0.673 r_scbond_it 0.673 r_scbond_other 0.671 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3574 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 1
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling