4R6D

Modified mTFP* for enhanced metal binding: co-crystallization with CuCl2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.529325.9% PEG3000, 100mM MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1943.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.198α = 90
b = 67.656β = 90
c = 84.271γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker Platinum 1352014-06-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.557099.90.0417325463252622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6599.80.394.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 4Q9W1.55103240330761164299.750.15290.150660.19397RANDOM14.456
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.180.46-0.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.085
r_sphericity_free32.773
r_dihedral_angle_4_deg12.615
r_dihedral_angle_3_deg12.185
r_sphericity_bonded9.342
r_dihedral_angle_1_deg6.292
r_long_range_B_refined3.507
r_long_range_B_other2.646
r_rigid_bond_restr2.345
r_scangle_other2.076
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.085
r_sphericity_free32.773
r_dihedral_angle_4_deg12.615
r_dihedral_angle_3_deg12.185
r_sphericity_bonded9.342
r_dihedral_angle_1_deg6.292
r_long_range_B_refined3.507
r_long_range_B_other2.646
r_rigid_bond_restr2.345
r_scangle_other2.076
r_scbond_it1.881
r_scbond_other1.881
r_angle_refined_deg1.608
r_mcangle_it1.494
r_mcangle_other1.494
r_mcbond_it1.255
r_mcbond_other1.255
r_angle_other_deg0.756
r_chiral_restr0.094
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1746
Nucleic Acid Atoms
Solvent Atoms310
Heterogen Atoms2

Software

Software
Software NamePurpose
PROTEUM PLUSdata collection
PHASERphasing
REFMACrefinement
PROTEUM PLUSdata reduction
SCALEPACKdata scaling