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Crystal Structure of MTIP from Plasmodium falciparum in complex with a peptide-fragment chimera
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AOM PDB ENTRY 4AOM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2M ammonium sulfate, 20% PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.13 42.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.71 α = 90 b = 55.76 β = 90 c = 75.86 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Pilatus 2M 2012-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 44.93 97.6 0.042 13.2 3 11020 11020
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.09 97.9 0.106 6.9 3.2 1578
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4AOM 1.98 44.93 10988 9909 1079 96.79 0.19858 0.19578 0.2047 0.22266 0.2324 RANDOM 17.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.42 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 29.313 r_dihedral_angle_2_deg 27.645 r_dihedral_angle_3_deg 11.907 r_dihedral_angle_1_deg 5.457 r_long_range_B_refined 3.277 r_long_range_B_other 3.191 r_scangle_other 1.659 r_mcangle_other 1.466 r_mcangle_it 1.465 r_angle_refined_deg 1.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 29.313 r_dihedral_angle_2_deg 27.645 r_dihedral_angle_3_deg 11.907 r_dihedral_angle_1_deg 5.457 r_long_range_B_refined 3.277 r_long_range_B_other 3.191 r_scangle_other 1.659 r_mcangle_other 1.466 r_mcangle_it 1.465 r_angle_refined_deg 1.177 r_scbond_it 1.023 r_scbond_other 1.022 r_angle_other_deg 1.011 r_mcbond_it 0.875 r_mcbond_other 0.856 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1188 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 12
Software Software Software Name Purpose Adxv data processing PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling