X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.12931.7M ammonium phosphate monobasic, 0.1M Tris, 7%(v/v) PEG400, pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0740.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.138α = 90
b = 82.765β = 90
c = 119.898γ = 90
Symmetry
Space GroupI 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2010-02-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-5A1.0000Photon FactoryBL-5A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.035099.125665-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.032.1299.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.0335.9919907168882.440.222360.219950.25037RANDOM68.505
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
10.61-5.22-5.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.329
r_dihedral_angle_4_deg16.827
r_dihedral_angle_3_deg13.333
r_long_range_B_other8.014
r_long_range_B_refined8.002
r_scangle_other5.657
r_dihedral_angle_1_deg4.973
r_mcangle_other4.892
r_mcangle_it4.89
r_scbond_it4.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.329
r_dihedral_angle_4_deg16.827
r_dihedral_angle_3_deg13.333
r_long_range_B_other8.014
r_long_range_B_refined8.002
r_scangle_other5.657
r_dihedral_angle_1_deg4.973
r_mcangle_other4.892
r_mcangle_it4.89
r_scbond_it4.03
r_scbond_other3.922
r_mcbond_it3.647
r_mcbond_other3.639
r_angle_refined_deg1.336
r_angle_other_deg0.909
r_chiral_restr0.071
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2506
Nucleic Acid Atoms
Solvent Atoms25
Heterogen Atoms16

Software

Software
Software NamePurpose
HKL-2000data collection
BALBESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling