4QWF

yCP beta5-M45I mutant in complex with carfilzomib


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.829320 MM MGAC2, 13% MPD, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties
Matthew coefficientSolvent content
3.6766.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 136.62α = 90
b = 299.64β = 112.88
c = 145.75γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2013-08-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
133097.40.0912.721498220939222
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.199.10.483.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1RYP3152093921989221047097.480.177020.175650.20279RANDOM61.674
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.8-0.2-5.942.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.67
r_sphericity_free27.275
r_sphericity_bonded16.939
r_dihedral_angle_3_deg13.62
r_dihedral_angle_4_deg13.084
r_dihedral_angle_1_deg4.94
r_long_range_B_refined3.773
r_long_range_B_other3.771
r_mcangle_other3.265
r_mcangle_it3.265
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.67
r_sphericity_free27.275
r_sphericity_bonded16.939
r_dihedral_angle_3_deg13.62
r_dihedral_angle_4_deg13.084
r_dihedral_angle_1_deg4.94
r_long_range_B_refined3.773
r_long_range_B_other3.771
r_mcangle_other3.265
r_mcangle_it3.265
r_scangle_other2.989
r_mcbond_it2.434
r_mcbond_other2.434
r_scbond_it2.372
r_scbond_other2.372
r_angle_refined_deg0.872
r_rigid_bond_restr0.84
r_angle_other_deg0.785
r_chiral_restr0.049
r_bond_refined_d0.005
r_bond_other_d0.003
r_gen_planes_refined0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms49295
Nucleic Acid Atoms
Solvent Atoms223
Heterogen Atoms371

Software

Software
Software NamePurpose
XDSdata scaling
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing