4QVR

2.3 Angstrom Crystal Structure of Hypothetical Protein FTT1539c from Francisella tularensis.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7295Protein: 6.9 mg/ml, 0.25 M Sodium chloride, 0.01 M Tris-HCL buffer pH(8.3), 5mM BME; Screen: PACT (D4), 0.1M MMT buffer (pH 7.0), 25%(w/v) PEG 1500., VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.6424.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.006α = 91
b = 47.424β = 102.19
c = 55.115γ = 99.5
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDBeryllium lenses2014-06-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.33098.50.0730.07333.15.91565315653-350.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3497.70.5640.5643.46737

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.326.64145751457575798.310.176210.176210.173660.22445RANDOM67.735
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.381.572.27-0.172.480.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.705
r_dihedral_angle_3_deg10.274
r_dihedral_angle_4_deg9.212
r_long_range_B_refined8.48
r_long_range_B_other8.466
r_scangle_other5.779
r_mcangle_it4.37
r_mcangle_other4.369
r_scbond_it3.622
r_scbond_other3.621
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.705
r_dihedral_angle_3_deg10.274
r_dihedral_angle_4_deg9.212
r_long_range_B_refined8.48
r_long_range_B_other8.466
r_scangle_other5.779
r_mcangle_it4.37
r_mcangle_other4.369
r_scbond_it3.622
r_scbond_other3.621
r_mcbond_it2.823
r_mcbond_other2.823
r_dihedral_angle_1_deg2.366
r_angle_refined_deg1.437
r_angle_other_deg0.717
r_chiral_restr0.085
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2448
Nucleic Acid Atoms
Solvent Atoms75
Heterogen Atoms

Software

Software
Software NamePurpose
Blu-Icedata collection
PHENIXmodel building
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing