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Structure of Methionyl-tRNA Synthetase in complex with N-(1H-benzimidazol-2-ylmethyl)-N'-(2,4-dichlorophenyl)-6-(morpholin-4-yl)-1,3,5-triazine-2,4-diamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.9 295 PEG 3350, Tris pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.24 45.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.438 α = 90 b = 76.726 β = 90 c = 118.222 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2006-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 21.25 69.04 28282 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.06 69.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.97 21.25 2 28282 28282 1426 69.04 0.205 0.205 0.2007 0.2829 0.2455 RANDOM 25.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 -0.21 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.361 r_dihedral_angle_3_deg 18.404 r_dihedral_angle_4_deg 16.493 r_dihedral_angle_1_deg 6.874 r_scangle_it 2.381 r_angle_refined_deg 1.881 r_scbond_it 1.822 r_mcangle_it 1.224 r_mcbond_it 0.773 r_symmetry_hbond_refined 0.688
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.361 r_dihedral_angle_3_deg 18.404 r_dihedral_angle_4_deg 16.493 r_dihedral_angle_1_deg 6.874 r_scangle_it 2.381 r_angle_refined_deg 1.881 r_scbond_it 1.822 r_mcangle_it 1.224 r_mcbond_it 0.773 r_symmetry_hbond_refined 0.688 r_symmetry_vdw_refined 0.318 r_nbtor_refined 0.312 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.214 r_chiral_restr 0.128 r_metal_ion_refined 0.023 r_bond_refined_d 0.02 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4220 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 33
Software Software Software Name Purpose SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection MOSFLM data reduction