☰ Navigation Tabs
Crystal structure of the formolase FLS in space group P 43 21 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AGO PDB entry 2AGO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 14 to 16 % PEG3000, 100 mM TrisHCl, 150 mM Calcium acetate., pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.87 57.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.742 α = 90 b = 144.742 β = 90 c = 269.553 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 70 2012-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.88 127.52 97.9 0.132 9.96 5.8 65530 64154 1 1 47.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.88 2.98 95.1 0.845 2.11 5.2 6122
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2AGO 2.88 127.52 2 61944 60906 3185 97.84 0.17054 0.16907 0.1726 0.19874 0.199 RANDOM 54.234
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.06 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.901 r_dihedral_angle_4_deg 18.327 r_dihedral_angle_3_deg 15.954 r_dihedral_angle_1_deg 5.615 r_long_range_B_refined 5.461 r_long_range_B_other 5.46 r_scangle_other 4.094 r_mcangle_other 3.142 r_mcangle_it 3.141 r_scbond_it 2.531
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.901 r_dihedral_angle_4_deg 18.327 r_dihedral_angle_3_deg 15.954 r_dihedral_angle_1_deg 5.615 r_long_range_B_refined 5.461 r_long_range_B_other 5.46 r_scangle_other 4.094 r_mcangle_other 3.142 r_mcangle_it 3.141 r_scbond_it 2.531 r_scbond_other 2.53 r_mcbond_it 1.963 r_mcbond_other 1.952 r_angle_refined_deg 1.484 r_angle_other_deg 1.037 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16708 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 124
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling