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Crystal structure of Androgen Receptor in complex with the ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z95 PDB entry 1Z95
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M HEPES pH (6.5-8.5), 1.5M MgSO4 , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.06 40.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.129 α = 90 b = 65.476 β = 90 c = 68.964 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 96.8 0.048 19.3 3.2 14439 22.56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 80.4 0.134 4.5 2.9 1172
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1Z95 2.1 29.62 14439 13660 723 100 0.24522 0.24363 0.2482 0.27502 0.2762 RANDOM 20.407
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.38 -1.19 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.516 r_dihedral_angle_4_deg 15.515 r_dihedral_angle_3_deg 12.097 r_dihedral_angle_1_deg 4.149 r_angle_refined_deg 0.784 r_angle_other_deg 0.671 r_scangle_it 0.372 r_mcangle_it 0.272 r_scbond_it 0.228 r_nbd_refined 0.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.516 r_dihedral_angle_4_deg 15.515 r_dihedral_angle_3_deg 12.097 r_dihedral_angle_1_deg 4.149 r_angle_refined_deg 0.784 r_angle_other_deg 0.671 r_scangle_it 0.372 r_mcangle_it 0.272 r_scbond_it 0.228 r_nbd_refined 0.177 r_mcbond_it 0.159 r_symmetry_vdw_other 0.151 r_nbd_other 0.136 r_symmetry_vdw_refined 0.115 r_symmetry_hbond_refined 0.095 r_xyhbond_nbd_refined 0.085 r_nbtor_other 0.078 r_chiral_restr 0.041 r_mcbond_other 0.017 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1941 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 21
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling