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Structure of a fragment of human phospholipase C-beta3 delta472-559, in complex with Galphaq
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OHM PDB ENTRY 3OHM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277.15 100 mM BisTris, 200 mM NaCl, 5% PEG 3350, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.98 58.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 200.623 α = 90 b = 88.761 β = 101.39 c = 92.232 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 300 mm CCD 2014-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.978 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 99.8 0.1 14.26 5.1 31986 31965 -2000 -2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.05 97.2 0.527 1.93 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3OHM 3 29.71 30373 30373 1591 99.61 0.19741 0.19515 0.1963 0.24027 0.2338 RANDOM 58.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 -0.07 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.86 r_dihedral_angle_3_deg 14.777 r_dihedral_angle_4_deg 13.276 r_dihedral_angle_1_deg 4.92 r_long_range_B_refined 2.161 r_long_range_B_other 2.161 r_mcangle_it 1.267 r_mcangle_other 1.267 r_angle_refined_deg 0.887 r_scangle_other 0.861
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.86 r_dihedral_angle_3_deg 14.777 r_dihedral_angle_4_deg 13.276 r_dihedral_angle_1_deg 4.92 r_long_range_B_refined 2.161 r_long_range_B_other 2.161 r_mcangle_it 1.267 r_mcangle_other 1.267 r_angle_refined_deg 0.887 r_scangle_other 0.861 r_mcbond_other 0.679 r_mcbond_it 0.678 r_angle_other_deg 0.676 r_scbond_it 0.442 r_scbond_other 0.442 r_chiral_restr 0.049 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8684 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 35
Software Software Software Name Purpose HKL-2000 data collection REFMAC refinement DENZO data reduction SCALEPACK data scaling REFMAC phasing