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Crystal structure of Haloquadratum walsbyi bacteriorhodopsin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPID CUBIC PHASE 4 293 ammonium sulfate, NaCl, sodium acetate, PEG 200, pH 4.0, LIPID CUBIC PHASE, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 1.89 34.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.939 α = 90 b = 29.799 β = 118.76 c = 124.973 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD RAYONIX MX-225 2013-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.90000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 30 97.8 0.168 0.168 8.212 3.5 48309 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.58 2.67 98 0.791 0.791 2.016 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.57 28.87 13107 691 97.31 0.20818 0.20705 0.2001 0.2294 0.2207 RANDOM 48.988
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.53 0.62 -2.29 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.013 r_dihedral_angle_3_deg 23.14 r_dihedral_angle_4_deg 16.828 r_dihedral_angle_1_deg 5.17 r_angle_refined_deg 1.623 r_angle_other_deg 0.986 r_chiral_restr 0.123 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.013 r_dihedral_angle_3_deg 23.14 r_dihedral_angle_4_deg 16.828 r_dihedral_angle_1_deg 5.17 r_angle_refined_deg 1.623 r_angle_other_deg 0.986 r_chiral_restr 0.123 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3487 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 72
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling