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Structure of Aldehyde Dehydrogenase from Bacillus cereus, E194S mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4PS9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 287 0.15M DL-malic pH 7.0, 20% PEG 3350 , VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.6 52.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.558 α = 90 b = 93.655 β = 95.55 c = 247.854 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97951 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 84.9 442246 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 81.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4PS9 1.9 43.56 420074 22144 84.9 0.20658 0.20422 0.2112 0.25156 0.255 RANDOM 17.678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.02 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.038 r_dihedral_angle_4_deg 19.062 r_dihedral_angle_3_deg 18.379 r_dihedral_angle_1_deg 7.275 r_long_range_B_refined 4.473 r_long_range_B_other 4.441 r_scangle_other 3.526 r_scbond_it 2.375 r_scbond_other 2.303 r_mcangle_it 2.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.038 r_dihedral_angle_4_deg 19.062 r_dihedral_angle_3_deg 18.379 r_dihedral_angle_1_deg 7.275 r_long_range_B_refined 4.473 r_long_range_B_other 4.441 r_scangle_other 3.526 r_scbond_it 2.375 r_scbond_other 2.303 r_mcangle_it 2.101 r_mcangle_other 2.062 r_angle_refined_deg 2.059 r_mcbond_it 1.491 r_mcbond_other 1.49 r_angle_other_deg 1.069 r_chiral_restr 0.177 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 45381 Nucleic Acid Atoms Solvent Atoms 1749 Heterogen Atoms 24
Software Software Software Name Purpose HKL-2000 data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling