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Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, quadruple mutant, P21212 form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.1 M Tris, pH 7.0, 10% PEG8000, 0.2 M magnesium chloride, 3% trehalose, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.61 65.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.5 α = 90 b = 147.73 β = 90 c = 167.63 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97920 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 6.49 93.71 99.6 0.086 14.16 9001 -3 410.357
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 6.49 6.66 96.1 0.819 2.34
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6.494 93.71 8551 451 99.56 0.2739 0.271 0.2728 0.3242 0.3314 RANDOM 309.413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 26.11 -14.18 -11.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.366 r_mcangle_it 14.527 r_dihedral_angle_3_deg 14.263 r_dihedral_angle_4_deg 13.41 r_mcbond_other 8.535 r_mcbond_it 8.534 r_dihedral_angle_1_deg 4.82 r_angle_other_deg 1.642 r_angle_refined_deg 1.007 r_chiral_restr 0.051
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.366 r_mcangle_it 14.527 r_dihedral_angle_3_deg 14.263 r_dihedral_angle_4_deg 13.41 r_mcbond_other 8.535 r_mcbond_it 8.534 r_dihedral_angle_1_deg 4.82 r_angle_other_deg 1.642 r_angle_refined_deg 1.007 r_chiral_restr 0.051 r_bond_refined_d 0.007 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20256 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction