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Mutations Outside the Active Site of HIV-1 Protease Alter Enzyme Structure and Dynamic Ensemble of the Active Site to Confer Drug Resistance
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 295 126mM Phosphate buffer, 63mM Sodium Citrate, 24-29% Ammonium Sulfate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.1 41.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.813 α = 90 b = 58.225 β = 90 c = 61.824 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Bent conical Si-mirror (Rh coated) 2008-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9002 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 39.25 98.8 0.048 16.8 6.5 29633 29633 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 96.7 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 39.25 29773 28079 1497 98.72 0.1838 0.18253 0.1847 0.20737 0.208 RANDOM 25.341
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 1.26 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.325 r_dihedral_angle_3_deg 11.65 r_dihedral_angle_4_deg 10.289 r_dihedral_angle_1_deg 6.237 r_scangle_it 2.464 r_scbond_it 1.768 r_angle_refined_deg 1.497 r_mcangle_it 1.116 r_angle_other_deg 0.876 r_mcbond_it 0.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.325 r_dihedral_angle_3_deg 11.65 r_dihedral_angle_4_deg 10.289 r_dihedral_angle_1_deg 6.237 r_scangle_it 2.464 r_scbond_it 1.768 r_angle_refined_deg 1.497 r_mcangle_it 1.116 r_angle_other_deg 0.876 r_mcbond_it 0.817 r_nbd_other 0.204 r_nbd_refined 0.199 r_mcbond_other 0.199 r_symmetry_hbond_refined 0.185 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.144 r_symmetry_vdw_other 0.131 r_chiral_restr 0.1 r_symmetry_vdw_refined 0.095 r_nbtor_other 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1506 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-3000 data reduction HKL-3000 data scaling AMoRE phasing