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Structure of a putative branched-chain amino acid ABC transporter from Chromobacterium violaceum ATCC 12472
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1 M Hepes, 25% PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.182 α = 90 b = 72.332 β = 95.13 c = 45.146 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRROR 2014-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 99.6 0.07 34.3 3.7 46422 46422 -3 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 100 0.52 2.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 30 44047 44047 2347 99.36 0.18793 0.18565 0.1942 0.23289 0.2375 RANDOM 28.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.24 -0.49 2.93 -0.6
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 36.35 r_dihedral_angle_2_deg 32.785 r_dihedral_angle_3_deg 14.198 r_dihedral_angle_4_deg 14.079 r_sphericity_bonded 9.567 r_dihedral_angle_1_deg 6.151 r_long_range_B_refined 3.669 r_scangle_other 3.573 r_long_range_B_other 3.531 r_scbond_it 3.215
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 36.35 r_dihedral_angle_2_deg 32.785 r_dihedral_angle_3_deg 14.198 r_dihedral_angle_4_deg 14.079 r_sphericity_bonded 9.567 r_dihedral_angle_1_deg 6.151 r_long_range_B_refined 3.669 r_scangle_other 3.573 r_long_range_B_other 3.531 r_scbond_it 3.215 r_scbond_other 3.203 r_mcangle_it 2.829 r_mcangle_other 2.828 r_mcbond_it 2.484 r_mcbond_other 2.476 r_angle_refined_deg 1.723 r_angle_other_deg 0.842 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2200 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 20
Software Software Software Name Purpose Blu-Ice data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling