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ATPase GspE in complex with the cytoplasmic domain of GspL from the Vibrio vulnificus type II Secretion system
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.83 56.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 226.43 α = 90 b = 133.9 β = 91.41 c = 93.49 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 CCD MARMOSAIC 325 mm CCD 2009-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 43.22 95.2 10.41 1.96 72192
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.83 43.22 62082 3317 98.29 0.24923 0.24763 0.2469 0.27977 0.2763 RANDOM 57.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.1 0.04 2.37 -5.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.527 r_dihedral_angle_3_deg 12.711 r_dihedral_angle_4_deg 11.849 r_long_range_B_refined 10.217 r_long_range_B_other 10.217 r_scangle_other 5.911 r_mcangle_it 5.446 r_mcangle_other 5.446 r_dihedral_angle_1_deg 4.282 r_scbond_it 3.606
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.527 r_dihedral_angle_3_deg 12.711 r_dihedral_angle_4_deg 11.849 r_long_range_B_refined 10.217 r_long_range_B_other 10.217 r_scangle_other 5.911 r_mcangle_it 5.446 r_mcangle_other 5.446 r_dihedral_angle_1_deg 4.282 r_scbond_it 3.606 r_scbond_other 3.606 r_mcbond_it 3.405 r_mcbond_other 3.403 r_angle_other_deg 1.106 r_angle_refined_deg 0.978 r_chiral_restr 0.05 r_bond_refined_d 0.008 r_bond_other_d 0.005 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15337 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 99
Software Software Software Name Purpose REFMAC refinement