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L-pipecolic acid-bound L-proline cis-4-hydroxylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 288 CAPS, Ammonium sulfate, Lithium sulfate
Crystal Properties Matthews coefficient Solvent content 2.93 57.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.68 α = 90 b = 123.395 β = 90 c = 56.98 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD RAYONIX MX325HE 2013-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.900 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 19.87 100 0.055 0.059 0.02 6.7 6.7 97557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 100 0.481 0.481 0.211 1.6 5.9 14141
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 19.87 97557 4882 99.94 0.1368 0.1354 0.1378 0.1619 0.1642 RANDOM 22.738
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -0.61 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.86 r_sphericity_free 33.368 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_3_deg 11.92 r_sphericity_bonded 11.811 r_dihedral_angle_1_deg 6.38 r_mcangle_it 2.179 r_rigid_bond_restr 2.097 r_mcbond_it 1.708 r_mcbond_other 1.697
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.86 r_sphericity_free 33.368 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_3_deg 11.92 r_sphericity_bonded 11.811 r_dihedral_angle_1_deg 6.38 r_mcangle_it 2.179 r_rigid_bond_restr 2.097 r_mcbond_it 1.708 r_mcbond_other 1.697 r_angle_refined_deg 1.415 r_angle_other_deg 0.788 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2312 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 68
Software Software Software Name Purpose iMOSFLM data reduction SCALA data scaling MOLREP phasing PDB_EXTRACT data extraction Coot model building REFMAC refinement