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Directed evolution of a B3 metallo-beta-lactamase AIM-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 277.15 PEG 8000, Zinc acetate, Sodium cacodylate
Crystal Properties Matthews coefficient Solvent content 3.24 62.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.453 α = 90 b = 76.453 β = 90 c = 240.27 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 1.89 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 44.49 99.8 2.25 11 34233
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.89 66.21 32428 1726 99.68 0.17628 0.17503 0.1865 0.19964 0.2091 RANDOM 18.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.18 0.36 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.998 r_dihedral_angle_4_deg 22.636 r_dihedral_angle_3_deg 13.747 r_dihedral_angle_1_deg 6.354 r_long_range_B_refined 5.413 r_long_range_B_other 5.329 r_scangle_other 3.622 r_scbond_it 2.369 r_scbond_other 2.369 r_mcangle_it 2.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.998 r_dihedral_angle_4_deg 22.636 r_dihedral_angle_3_deg 13.747 r_dihedral_angle_1_deg 6.354 r_long_range_B_refined 5.413 r_long_range_B_other 5.329 r_scangle_other 3.622 r_scbond_it 2.369 r_scbond_other 2.369 r_mcangle_it 2.251 r_mcangle_other 2.25 r_angle_refined_deg 1.812 r_mcbond_it 1.549 r_mcbond_other 1.545 r_angle_other_deg 0.933 r_chiral_restr 0.122 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2001 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling