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Crystal structure of the bacterial A1408C-mutant ribosomal decoding site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 Sodium Cacodylate (pH7), Spermine tetrahydrochloride, MPD, Ammonium Chloride
Crystal Properties Matthews coefficient Solvent content 1.86 33.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.437 α = 90 b = 40.475 β = 103.07 c = 41.272 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2012-01-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.91992, 0.92005, 0.90660, 1.0 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40.2 98.4 0.039 19.2 7.21 14089
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 100 0.295 4.9 7.23 1406
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.6 20 14085 1430 98.4 0.2477 0.2706 0.2774 35.855
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.081 3.317 -0.598 1.679
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.102 c_scbond_it 1.47 c_angle_d 0.881 c_bond_d 0.004 c_mcbond_it c_mcangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 970 Solvent Atoms 150 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection PHASES phasing CNS refinement PDB_EXTRACT data extraction SOLVE phasing d*TREK data reduction d*TREK data scaling