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GlnK2 from Haloferax mediterranei complexed with ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 294 2M ammonium sulphate, 0.1 M NaCitrate, 0.2 M Na/K Tartrate
Crystal Properties Matthews coefficient Solvent content 2.52 51.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.185 α = 90 b = 89.185 β = 90 c = 96.349 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.32 60.26 96.8 21.9 7.7 25401
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.45 60.26 23980 1285 96.1 0.17423 0.17338 0.1788 0.18987 0.1943 RANDOM 28.574
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 0.96 0.96 -3.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.832 r_sphericity_free 30.609 r_sphericity_bonded 17.768 r_dihedral_angle_4_deg 15.083 r_dihedral_angle_3_deg 12.528 r_dihedral_angle_1_deg 5.399 r_rigid_bond_restr 4.315 r_long_range_B_refined 4.282 r_scangle_other 4.138 r_long_range_B_other 4.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.832 r_sphericity_free 30.609 r_sphericity_bonded 17.768 r_dihedral_angle_4_deg 15.083 r_dihedral_angle_3_deg 12.528 r_dihedral_angle_1_deg 5.399 r_rigid_bond_restr 4.315 r_long_range_B_refined 4.282 r_scangle_other 4.138 r_long_range_B_other 4.133 r_scbond_it 3.349 r_scbond_other 3.347 r_mcangle_it 2.898 r_mcangle_other 2.895 r_mcbond_other 2.526 r_mcbond_it 2.524 r_angle_refined_deg 1.425 r_angle_other_deg 1.125 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 748 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement