X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5293Protein concentration 30 mg mL-1, 0.1 M TRIS/HCl pH 8.5, 50 mM lysine, PEG MME 2K 11% v/v of 50% w/v stock solutions or PEG MME 550 16% v/v of 50 % w/v stock solutions
Crystal Properties
Matthews coefficientSolvent content
2.4148.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.63α = 90
b = 66.4β = 119.3
c = 71.98γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMAR scanner 345 mm plate1996-02-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7B0.89EMBL/DESY, HAMBURGBW7B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.052097.410.52.89969536134
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.0989.30.1152.61.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.0519.8834332180197.30.14550.143490.18355RANDOM19.48
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.65-1.053.25-0.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.447
r_dihedral_angle_4_deg16.212
r_dihedral_angle_3_deg15.222
r_long_range_B_refined5.87
r_long_range_B_other5.862
r_dihedral_angle_1_deg5.337
r_scangle_other3.777
r_scbond_it2.381
r_scbond_other2.38
r_mcangle_it2.372
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.447
r_dihedral_angle_4_deg16.212
r_dihedral_angle_3_deg15.222
r_long_range_B_refined5.87
r_long_range_B_other5.862
r_dihedral_angle_1_deg5.337
r_scangle_other3.777
r_scbond_it2.381
r_scbond_other2.38
r_mcangle_it2.372
r_mcangle_other2.372
r_angle_refined_deg1.683
r_mcbond_it1.499
r_mcbond_other1.494
r_angle_other_deg0.888
r_chiral_restr0.1
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4211
Nucleic Acid Atoms
Solvent Atoms294
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement