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X-ray structure of a designed CISK-PX domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XTE PDB entry 1XTE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.2 M Ammonium Sulfate, 0.1 M Sodium Acetate pH 4.6, 30 %w/v Peg 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.23 44.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.672 α = 90 b = 49.258 β = 90 c = 68.009 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2013-11-25 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.978 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 39.893 99.17 57.75 12.2 12689
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1XTE 1.73 39.89 12689 654 99.44 0.19426 0.19298 0.2042 0.21861 0.2131 RANDOM 36.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 -0.56 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.835 r_dihedral_angle_4_deg 20.558 r_dihedral_angle_3_deg 13.767 r_dihedral_angle_1_deg 6.117 r_angle_refined_deg 1.497 r_angle_other_deg 0.607 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.835 r_dihedral_angle_4_deg 20.558 r_dihedral_angle_3_deg 13.767 r_dihedral_angle_1_deg 6.117 r_angle_refined_deg 1.497 r_angle_other_deg 0.607 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 895 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement