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Dimer of a C-terminal fragment of phage T4 gp5 beta-helix
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JJ2 PDBID 4JJ2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 22% PEG 4000, 200mM Li2SO4, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.36 47.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.288 α = 90 b = 73.786 β = 113.39 c = 111.602 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M dynamically bendable mirror 2012-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 92.7 96.9 0.094 6.8 2.4 116357 2 34.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.08 96.3 0.347 2.52 2.44 35910
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDBID 4JJ2 1.96 59.87 116357 110537 5818 99.13 0.22229 0.22229 0.21932 0.2245 0.27854 0.2801 RANDOM 36.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.03 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.58 r_dihedral_angle_4_deg 19.988 r_dihedral_angle_3_deg 15.083 r_long_range_B_refined 6.804 r_long_range_B_other 6.804 r_dihedral_angle_1_deg 6.532 r_scangle_other 3.465 r_scbond_it 2.312 r_scbond_other 2.312 r_mcangle_it 2.184
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.58 r_dihedral_angle_4_deg 19.988 r_dihedral_angle_3_deg 15.083 r_long_range_B_refined 6.804 r_long_range_B_other 6.804 r_dihedral_angle_1_deg 6.532 r_scangle_other 3.465 r_scbond_it 2.312 r_scbond_other 2.312 r_mcangle_it 2.184 r_mcangle_other 2.184 r_angle_refined_deg 1.849 r_angle_other_deg 1.491 r_mcbond_it 1.459 r_mcbond_other 1.458 r_chiral_restr 0.112 r_bond_refined_d 0.019 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12156 Nucleic Acid Atoms Solvent Atoms 638 Heterogen Atoms 354
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XDS data scaling