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AA13 Lytic polysaccharide monooxygenase from Aspergillus oryzae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 0.14M calcium chloride, 0.07M sodium acetate pH 4.6, 14 %v/v isopropanol, 30% v/v glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.04 39.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.56 α = 90 b = 61.6 β = 90 c = 73.16 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2013-05-08 M SINGLE WAVELENGTH 2 1 x-ray 100 2013-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.037 MAX II I911-2 2 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 99.2 32929 32929
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.59 98.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 30 32929 32929 1165 99.16 0.12107 0.12107 0.11932 0.122 0.16997 0.1727 RANDOM 15.027
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.34 -2.18 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.274 r_sphericity_bonded 19.439 r_dihedral_angle_4_deg 19.075 r_dihedral_angle_1_deg 12.158 r_dihedral_angle_3_deg 12.005 r_scangle_other 8.805 r_scbond_it 7.118 r_scbond_other 7.115 r_rigid_bond_restr 5.269 r_long_range_B_other 4.987
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.274 r_sphericity_bonded 19.439 r_dihedral_angle_4_deg 19.075 r_dihedral_angle_1_deg 12.158 r_dihedral_angle_3_deg 12.005 r_scangle_other 8.805 r_scbond_it 7.118 r_scbond_other 7.115 r_rigid_bond_restr 5.269 r_long_range_B_other 4.987 r_long_range_B_refined 4.984 r_mcangle_it 4.17 r_mcangle_other 4.168 r_mcbond_it 3.494 r_mcbond_other 3.492 r_angle_refined_deg 1.993 r_angle_other_deg 0.987 r_chiral_restr 0.13 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1799 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 77
Software Software Software Name Purpose MAR345 data collection PHENIX model building REFMAC refinement XDS data reduction XSCALE data scaling PHENIX phasing