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Selinadiene Synthase apo and in complex with diphosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SeMet model of Selinadiene Synthase (experimental phasing)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 0.1 M TRIS, 200 mM MgCl2, 24% PEG 3350, 1 mM farnesyl pyrophosphate, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 50.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.78 α = 90 b = 119.09 β = 90 c = 186.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.6 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 97 0.07 13.9 3.3 97702 94771 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.153 95.7 0.487 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SeMet model of Selinadiene Synthase (experimental phasing) 2.1 15 94724 89987 4737 97 0.15924 0.15696 0.1655 0.20265 0.2078 RANDOM 31.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 2.97 -2.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.008 r_sphericity_free 28.833 r_dihedral_angle_4_deg 20.039 r_dihedral_angle_3_deg 16.667 r_sphericity_bonded 6.188 r_dihedral_angle_1_deg 4.933 r_rigid_bond_restr 1.522 r_angle_refined_deg 1.014 r_angle_other_deg 0.756 r_chiral_restr 0.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.008 r_sphericity_free 28.833 r_dihedral_angle_4_deg 20.039 r_dihedral_angle_3_deg 16.667 r_sphericity_bonded 6.188 r_dihedral_angle_1_deg 4.933 r_rigid_bond_restr 1.522 r_angle_refined_deg 1.014 r_angle_other_deg 0.756 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10707 Nucleic Acid Atoms Solvent Atoms 784 Heterogen Atoms 36
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling