X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4KUAPDB ENTRY 4KUA

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52892M ammonium sulfate, 0.1M Bis-Tris pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.4148.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.754α = 90
b = 76.072β = 90
c = 39.483γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rmirrors2013-06-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97912APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.455099.70.0430.04346.95.43133531335-321.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.451.481000.7160.7162.35.41539

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4KUA1.45462970229702158399.010.154960.154960.15360.17924RANDOM23.483
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.52-0.350.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.343
r_dihedral_angle_4_deg17.932
r_dihedral_angle_3_deg12.171
r_long_range_B_refined7.184
r_long_range_B_other6.721
r_dihedral_angle_1_deg5.847
r_scangle_other3.858
r_angle_other_deg3.543
r_scbond_it2.615
r_scbond_other2.606
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.343
r_dihedral_angle_4_deg17.932
r_dihedral_angle_3_deg12.171
r_long_range_B_refined7.184
r_long_range_B_other6.721
r_dihedral_angle_1_deg5.847
r_scangle_other3.858
r_angle_other_deg3.543
r_scbond_it2.615
r_scbond_other2.606
r_mcangle_it1.905
r_mcangle_other1.905
r_angle_refined_deg1.881
r_mcbond_it1.282
r_mcbond_other1.252
r_chiral_restr0.117
r_bond_refined_d0.018
r_gen_planes_other0.017
r_gen_planes_refined0.01
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1241
Nucleic Acid Atoms
Solvent Atoms217
Heterogen Atoms92

Software

Software
Software NamePurpose
HKL-3000data collection
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
Cootmodel building
HKL-3000data reduction
HKL-3000data scaling