☰ Navigation Tabs
X-ray Crystal Structure of a 3-hydroxyacyl-CoA dehydrogenase from Brucella suis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.4 uL protein at 19.86 mg/mL + 0.4 uL JCSG+ D5 - 0.1 M HEPES pH 7.50, 70% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.19 43.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.47 α = 90 b = 92.24 β = 90 c = 135.49 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2013-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 98.7 0.046 47.68 94147 92937 -3 16.899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 93.4 0.461 5.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 38.235 94147 92937 4661 98.71 0.1373 0.1356 0.1356 0.1687 0.1691 RANDOM 13.6246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.23 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.143 r_dihedral_angle_4_deg 17.942 r_sphericity_bonded 10.628 r_dihedral_angle_3_deg 10.537 r_dihedral_angle_1_deg 5.872 r_rigid_bond_restr 2.267 r_mcangle_it 1.914 r_mcbond_other 1.572 r_mcbond_it 1.57 r_angle_refined_deg 1.443
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.143 r_dihedral_angle_4_deg 17.942 r_sphericity_bonded 10.628 r_dihedral_angle_3_deg 10.537 r_dihedral_angle_1_deg 5.872 r_rigid_bond_restr 2.267 r_mcangle_it 1.914 r_mcbond_other 1.572 r_mcbond_it 1.57 r_angle_refined_deg 1.443 r_angle_other_deg 0.799 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3677 Nucleic Acid Atoms Solvent Atoms 601 Heterogen Atoms 17
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction