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Murine Norovirus RdRp in complex with PPNDS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UQS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 macrobatch 8.4 293.15 1.6M (NH4)2SO4, 12% glycerol, 100mM TRIS/HCl, pH 8.4, macrobatch, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 3.37 63.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.71 α = 90 b = 197.43 β = 114.06 c = 109.57 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97625 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 59.4 100 90345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UQS 2.4 59.36 85810 4532 99.98 0.19439 0.19439 0.19151 0.2487 0.2652 RANDOM 45.121
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.11 0.03 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.924 r_dihedral_angle_4_deg 19.088 r_dihedral_angle_3_deg 16.203 r_dihedral_angle_1_deg 5.998 r_angle_other_deg 3.526 r_angle_refined_deg 1.389 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.924 r_dihedral_angle_4_deg 19.088 r_dihedral_angle_3_deg 16.203 r_dihedral_angle_1_deg 5.998 r_angle_other_deg 3.526 r_angle_refined_deg 1.389 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11355 Nucleic Acid Atoms Solvent Atoms 748 Heterogen Atoms 284
Software Software Software Name Purpose PXSOFT data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling