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Structure of P450 BM3 A82F F87V in complex with S-omeprazol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4KEY pdb entry 4KEY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 200mM MgCl2, 20% PEG 3500, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.79 55.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.42 α = 90 b = 132.88 β = 90 c = 147.49 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 66 99.9 6.6 102990 102990 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.88 99.8 0.619 2.5 5.8 7523
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 4KEY 1.83 66 97754 97754 5147 99.91 0.18786 0.18786 0.1861 0.2214 0.2175 RANDOM 22.325
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.33 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.077 r_dihedral_angle_4_deg 18.908 r_dihedral_angle_3_deg 14.006 r_dihedral_angle_1_deg 6.648 r_scangle_it 4.976 r_scbond_it 3.206 r_mcangle_it 2.117 r_angle_refined_deg 1.935 r_mcbond_it 1.255 r_angle_other_deg 1.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.077 r_dihedral_angle_4_deg 18.908 r_dihedral_angle_3_deg 14.006 r_dihedral_angle_1_deg 6.648 r_scangle_it 4.976 r_scbond_it 3.206 r_mcangle_it 2.117 r_angle_refined_deg 1.935 r_mcbond_it 1.255 r_angle_other_deg 1.059 r_mcbond_other 0.38 r_chiral_restr 0.126 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7206 Nucleic Acid Atoms Solvent Atoms 569 Heterogen Atoms 132
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling