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Crystal structure of the human cyclin G associated kinase (GAK)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 1.0M succinic acid, 0.1M Bis-Tris Propane, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289.0K
Crystal Properties Matthews coefficient Solvent content 2.67 53.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.425 α = 90 b = 103.425 β = 90 c = 131.951 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2009-11-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794, 0.97912 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.097 74.11 99.9 0.082 36.6 14.5 48311 48245
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.097 2.14 100 0.957 2.2 14 2356
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.097 74.11 2 48245 45803 2442 99.77 0.1662 0.16469 0.1782 0.19502 0.2037 RANDOM 55.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.965 r_dihedral_angle_4_deg 19.066 r_dihedral_angle_3_deg 14.402 r_long_range_B_refined 10.411 r_long_range_B_other 10.41 r_scangle_other 6.407 r_dihedral_angle_1_deg 6.26 r_mcangle_it 4.739 r_mcangle_other 4.739 r_scbond_it 4.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.965 r_dihedral_angle_4_deg 19.066 r_dihedral_angle_3_deg 14.402 r_long_range_B_refined 10.411 r_long_range_B_other 10.41 r_scangle_other 6.407 r_dihedral_angle_1_deg 6.26 r_mcangle_it 4.739 r_mcangle_other 4.739 r_scbond_it 4.122 r_scbond_other 4.06 r_mcbond_it 3.033 r_mcbond_other 3.03 r_angle_refined_deg 1.568 r_angle_other_deg 1.01 r_chiral_restr 0.091 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4268 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 28
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling