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L-Ficolin Complexed to Phosphocholine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 15%(w/v) PEG 8000, 200mM Ca acetate, 0.1M Hepes, pH 7.0, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.53 51.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.13 α = 90 b = 96.13 β = 90 c = 139.88 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97887 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.5 38564 38356 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 99.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 19.95 34287 34099 1795 99.45 0.21439 0.21439 0.21285 0.2144 0.24293 0.2444 RANDOM 60.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 -0.02 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.673 r_dihedral_angle_4_deg 23.598 r_dihedral_angle_3_deg 17.071 r_dihedral_angle_1_deg 7.233 r_long_range_B_refined 3.874 r_long_range_B_other 3.871 r_scangle_other 1.973 r_angle_refined_deg 1.898 r_angle_other_deg 1.331 r_scbond_it 1.276
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.673 r_dihedral_angle_4_deg 23.598 r_dihedral_angle_3_deg 17.071 r_dihedral_angle_1_deg 7.233 r_long_range_B_refined 3.874 r_long_range_B_other 3.871 r_scangle_other 1.973 r_angle_refined_deg 1.898 r_angle_other_deg 1.331 r_scbond_it 1.276 r_scbond_other 1.276 r_mcangle_it 1.167 r_mcangle_other 1.167 r_mcbond_it 0.694 r_mcbond_other 0.694 r_chiral_restr 0.187 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5134 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 91
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling