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Crystal Structure of Mesorhizobium Loti Arylamine N-acetyltransferase F42W Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BSZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 30% PEG 5000, 0.2M ammonium sulfate, 0.1M MES buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.57 52.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.86 α = 90 b = 115.08 β = 90 c = 115.57 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray PIXEL DECTRIS PILATUS 6M 2013-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 1.07169 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 32.01 99.7 0.064 0.071 14.1 61856 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.89 99.9 0.601 0.682 2.2 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BSZ 1.84 32.01 58644 3126 99.61 0.20486 0.2036 0.2082 0.22807 0.2298 RANDOM 33.561
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 2.29 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.251 r_dihedral_angle_4_deg 16.42 r_dihedral_angle_3_deg 12.243 r_long_range_B_refined 6.352 r_long_range_B_other 6.316 r_dihedral_angle_1_deg 6.1 r_scangle_other 4.545 r_mcangle_it 3.735 r_mcangle_other 3.735 r_scbond_it 2.917
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.251 r_dihedral_angle_4_deg 16.42 r_dihedral_angle_3_deg 12.243 r_long_range_B_refined 6.352 r_long_range_B_other 6.316 r_dihedral_angle_1_deg 6.1 r_scangle_other 4.545 r_mcangle_it 3.735 r_mcangle_other 3.735 r_scbond_it 2.917 r_scbond_other 2.914 r_mcbond_it 2.572 r_mcbond_other 2.572 r_angle_refined_deg 1.451 r_angle_other_deg 1.06 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4224 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement xia2 data reduction XDS data reduction xia2 data scaling XSCALE data scaling