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Crystal Structure of Mesorhizobium Loti Arylamine N-acetyltransferase 1 In Complex With CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BSZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 Crystallization details: Should be 30% PEG 5000, 0.2M ammonium sulfate, 0.1M MES buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.59 52.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.5 α = 90 b = 114.86 β = 90 c = 115.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray PIXEL DECTRIS PILATUS 6M 2013-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.98011 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 38.54 99.9 0.095 0.103 12 6.5 47549 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.07 0.636 0.693 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BSZ 2.02 37.18 45085 2404 99.86 0.19458 0.19314 0.2012 0.22076 0.2283 RANDOM 36.072
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 2.31 -1.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.542 r_dihedral_angle_4_deg 13.411 r_dihedral_angle_3_deg 11.543 r_long_range_B_refined 6.405 r_long_range_B_other 6.388 r_dihedral_angle_1_deg 5.708 r_scangle_other 4.469 r_mcangle_it 4.015 r_mcangle_other 4.015 r_scbond_it 2.787
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.542 r_dihedral_angle_4_deg 13.411 r_dihedral_angle_3_deg 11.543 r_long_range_B_refined 6.405 r_long_range_B_other 6.388 r_dihedral_angle_1_deg 5.708 r_scangle_other 4.469 r_mcangle_it 4.015 r_mcangle_other 4.015 r_scbond_it 2.787 r_scbond_other 2.787 r_mcbond_it 2.639 r_mcbond_other 2.638 r_angle_refined_deg 1.323 r_angle_other_deg 0.922 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4223 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 96
Software Software Software Name Purpose PHASER phasing REFMAC refinement xia2 data reduction XDS data reduction xia2 data scaling XSCALE data scaling