X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4FK1 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.32931.3M Na/K phosphate, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
4.7674.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.35α = 90
b = 96.35β = 90
c = 133.49γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2013-09-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63098.90.05611.23.5949129386722
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.799.90.4982.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4FK11.6109386789173469498.920.1490.14710.146450.15938RANDOM26.809
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.130.130.13-0.42
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free27.821
r_dihedral_angle_2_deg25.173
r_dihedral_angle_4_deg16.261
r_dihedral_angle_3_deg13.943
r_sphericity_bonded11.798
r_dihedral_angle_1_deg5.443
r_rigid_bond_restr2.397
r_angle_refined_deg1.259
r_angle_other_deg0.882
r_chiral_restr0.063
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free27.821
r_dihedral_angle_2_deg25.173
r_dihedral_angle_4_deg16.261
r_dihedral_angle_3_deg13.943
r_sphericity_bonded11.798
r_dihedral_angle_1_deg5.443
r_rigid_bond_restr2.397
r_angle_refined_deg1.259
r_angle_other_deg0.882
r_chiral_restr0.063
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2364
Nucleic Acid Atoms
Solvent Atoms439
Heterogen Atoms85

Software

Software
Software NamePurpose
XDSdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling