☰ Navigation Tabs
N-terminal domain of delta-subunit of RNA polymerase complexed with I3C and nickel ions
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 290.15 2M sodium/potassium phosphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290.15K 2 VAPOR DIFFUSION 8.2 290.15 1.8M sodium/potassium phosphate, pH 8.2, VAPOR DIFFUSION, temperature 290.15K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.65 α = 90 b = 110.2 β = 90 c = 85.26 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2011-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 1.5419 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 27.5 99.9 13668 13651 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 27.5 2 13651 12976 676 99.82 0.239 0.20418 0.20129 0.213 0.25937 0.2624 RANDOM 45.803
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.04 -2.55 -1.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.099 r_dihedral_angle_3_deg 15.899 r_dihedral_angle_4_deg 14.503 r_dihedral_angle_1_deg 6.15 r_angle_refined_deg 1.731 r_angle_other_deg 0.89 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.099 r_dihedral_angle_3_deg 15.899 r_dihedral_angle_4_deg 14.503 r_dihedral_angle_1_deg 6.15 r_angle_refined_deg 1.731 r_angle_other_deg 0.89 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1314 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 18
Software Software Software Name Purpose MAR345dtb data collection Auto-Rickshaw phasing MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling