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Inhibitors of 4-Phosphopanthetheine Adenylyltransferase (PPAT)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 14% to 19% polyethylene glycol 3350 (PEG 3350), 200 mM ammonium sulfate, 0.1M Propionic acid Cacodylate Bis-tris propane buffer, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 52.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.476 α = 90 b = 105.36 β = 94.69 c = 79.98 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 105.41 99.13 45145 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.38 41.701 53450 42857 2280 99.12 0.21982 0.21595 0.2208 0.29205 0.2893 RANDOM 37.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.03 -0.06 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.315 r_dihedral_angle_3_deg 18.113 r_dihedral_angle_4_deg 17.711 r_dihedral_angle_1_deg 6.928 r_mcangle_it 3.309 r_scbond_it 2.404 r_mcbond_other 2.214 r_mcbond_it 2.213 r_angle_refined_deg 1.888 r_angle_other_deg 0.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.315 r_dihedral_angle_3_deg 18.113 r_dihedral_angle_4_deg 17.711 r_dihedral_angle_1_deg 6.928 r_mcangle_it 3.309 r_scbond_it 2.404 r_mcbond_other 2.214 r_mcbond_it 2.213 r_angle_refined_deg 1.888 r_angle_other_deg 0.897 r_symmetry_vdw_refined 0.289 r_symmetry_vdw_other 0.262 r_xyhbond_nbd_refined 0.193 r_symmetry_hbond_refined 0.162 r_chiral_restr 0.093 r_xyhbond_nbd_other 0.035 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7724 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 396
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection d*TREK data reduction SCALA data scaling AMoRE phasing