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Crystal structure of PDE10A2 with fragment ZT0451 (8-nitroquinoline)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OUR PDB entry 2OUR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 18% PEG 4450, 0.2M calcium acetate, 50mM BME, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.02 39.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.859 α = 90 b = 82.158 β = 90 c = 156.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2011-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 39.73 95.8 0.12 8.8 4.1 28032 28032 -4 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 94.2 0.479 2.5 4.5 3935
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2OUR 2.3 39.73 26584 1405 0.23365 0.23075 0.2234 0.28713 0.2758 RANDOM 31.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 -0.39 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.186 r_dihedral_angle_3_deg 14.812 r_dihedral_angle_4_deg 13.621 r_dihedral_angle_1_deg 4.666 r_scangle_it 1.486 r_angle_refined_deg 1.086 r_mcangle_it 1.042 r_scbond_it 0.918 r_mcbond_it 0.581 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.186 r_dihedral_angle_3_deg 14.812 r_dihedral_angle_4_deg 13.621 r_dihedral_angle_1_deg 4.666 r_scangle_it 1.486 r_angle_refined_deg 1.086 r_mcangle_it 1.042 r_scbond_it 0.918 r_mcbond_it 0.581 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5263 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 17
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling