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Crystal structure of human glutathione transferase theta-2, complex with inorganic phosphate, GSH free, target EFI-507257
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LJR PDB ENTRY 1LJR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 Protein in 10 mm HEPES, ph 7.5, 150 mm sodium chloride, 5% glycerol, reservoir: 1.1M ammonium tartrate dibasic, 0.1m sodium acetate:HCl, pH 4.6, cryoprotectant: 20% glycerol, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.51 51.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.934 α = 90 b = 92.934 β = 90 c = 119.022 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2013-08-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 100 0.064 9.5 9.2 35310 -5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 2.1 9.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1LJR 2.1 50 34160 1108 99.98 0.1767 0.17485 0.1761 0.23525 0.2376 RANDOM 55.912
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.42 0.71 1.42 -4.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.698 r_dihedral_angle_4_deg 16.166 r_dihedral_angle_3_deg 14.797 r_long_range_B_refined 11.99 r_scbond_it 11.204 r_mcangle_it 7.026 r_mcbond_it 7.016 r_dihedral_angle_1_deg 4.691 r_angle_refined_deg 1.168 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.698 r_dihedral_angle_4_deg 16.166 r_dihedral_angle_3_deg 14.797 r_long_range_B_refined 11.99 r_scbond_it 11.204 r_mcangle_it 7.026 r_mcbond_it 7.016 r_dihedral_angle_1_deg 4.691 r_angle_refined_deg 1.168 r_chiral_restr 0.074 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3899 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 20
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling