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Crystal structure of apo-iduronidase in the R3 form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.01 M HEPES, pH 7.5, 0.26 M sodium potassium tartrate, 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 297K, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.2 61.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 259.36 α = 90 b = 259.36 β = 90 c = 71.81 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE collimating mirror with two stripes (Si, Rh/Pt) and toroidal focusing mirror (Rh/Pt) 2013-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 0.9793 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 49.01 99.54 0.139 12.22 10.7 104643
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.154 95.32 0.868 2.33 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 49.01 99410 5233 99.54 0.19215 0.19215 0.1914 0.1964 0.20637 0.2122 RANDOM 36.056
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 -1.84 -1.84 5.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.145 r_dihedral_angle_4_deg 15.497 r_dihedral_angle_3_deg 12.433 r_dihedral_angle_1_deg 5.767 r_angle_refined_deg 1.006 r_angle_other_deg 0.708 r_chiral_restr 0.057 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.145 r_dihedral_angle_4_deg 15.497 r_dihedral_angle_3_deg 12.433 r_dihedral_angle_1_deg 5.767 r_angle_refined_deg 1.006 r_angle_other_deg 0.708 r_chiral_restr 0.057 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9551 Nucleic Acid Atoms Solvent Atoms 433 Heterogen Atoms 307
Software Software Software Name Purpose MxDC data collection PHENIX model building REFMAC refinement XDS data reduction XDS data scaling PHENIX phasing