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Crystal structure of TON1374
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 295 0.16M magnesium chloride hexahydrate, 0.08M Tris-HCl, 24%(w/v) polyethylene glycol 4000, pH 8.5, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.57 52.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 266.144 α = 90 b = 60.964 β = 92.38 c = 75.354 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.0000 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 50 96.7 84239 84239 4.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 1.99 89.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.96 33.26 80008 4231 96.53 0.2135 0.2107 0.2144 0.2643 0.2632 RANDOM 47.4783
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 2.26 2.03 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.021 r_dihedral_angle_4_deg 22.287 r_dihedral_angle_3_deg 19.849 r_dihedral_angle_1_deg 8.868 r_angle_refined_deg 0.952 r_angle_other_deg 0.556 r_chiral_restr 0.066 r_gen_planes_refined 0.016 r_bond_refined_d 0.007 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.021 r_dihedral_angle_4_deg 22.287 r_dihedral_angle_3_deg 19.849 r_dihedral_angle_1_deg 8.868 r_angle_refined_deg 0.952 r_angle_other_deg 0.556 r_chiral_restr 0.066 r_gen_planes_refined 0.016 r_bond_refined_d 0.007 r_gen_planes_other 0.002 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8074 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 4
Software Software Software Name Purpose ADSC data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing