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Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR422
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TC7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Microbatch crystallization under oil 4.6 291 30% PEG 400, 0.1M cadmium chloride, 0.1M sodium acetate, pH 4.6, Microbatch crystallization under oil, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.86 33.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.125 α = 90 b = 63.161 β = 90 c = 86.436 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 43.22 99.8 0.176 13.5 14 32780 32707 25.84
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2.03 99.7 0.01437 2.3 14.3 5451
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TC7 1.929 37.136 1.35 32699 1655 99.91 0.192 0.191 0.1923 0.222 0.2216 RANDOM 32.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.759 -9.178 7.419
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.273 f_angle_d 1.275 f_chiral_restr 0.095 f_bond_d 0.006 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1995 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 11
Software Software Software Name Purpose PHENIX refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction RAPD data scaling BALBES phasing