X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3A62 

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.8256.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.511α = 90
b = 70.511β = 90
c = 150.484γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCCD ADSC unsupported-q3152011-06-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U1SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15022617

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3A622.15022302111897.180.21250.21030.2546RANDOM47.2591
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.571.57-3.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.485
r_dihedral_angle_4_deg18.589
r_dihedral_angle_3_deg16.572
r_scangle_it7.093
r_dihedral_angle_1_deg5.354
r_scbond_it4.671
r_mcangle_it4.177
r_rigid_bond_restr3.49
r_mcbond_it2.353
r_angle_refined_deg1.333
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.485
r_dihedral_angle_4_deg18.589
r_dihedral_angle_3_deg16.572
r_scangle_it7.093
r_dihedral_angle_1_deg5.354
r_scbond_it4.671
r_mcangle_it4.177
r_rigid_bond_restr3.49
r_mcbond_it2.353
r_angle_refined_deg1.333
r_chiral_restr0.126
r_bond_refined_d0.016
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2305
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling