☰ Navigation Tabs
Crystal structure of STK3 (MST2) SARAH domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.9 277.15 30% MPD, 0.1M acetate pH 4.9, 0.2M calcium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.3 46.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.32 α = 90 b = 61.32 β = 90 c = 301.86 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 32.84 99.7 0.067 12.9 5.4 114405 114371
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 99.8 0.544 2.9 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 30.66 114371 108637 5733 99.54 0.16279 0.16043 0.1609 0.20667 0.2068 RANDOM 22.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.46 -0.91
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.99 r_dihedral_angle_2_deg 29.375 r_dihedral_angle_4_deg 14.563 r_dihedral_angle_3_deg 13.654 r_sphericity_bonded 10.761 r_rigid_bond_restr 4.883 r_dihedral_angle_1_deg 4.773 r_scbond_it 3.877 r_mcangle_it 3.098 r_mcbond_it 2.638
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.99 r_dihedral_angle_2_deg 29.375 r_dihedral_angle_4_deg 14.563 r_dihedral_angle_3_deg 13.654 r_sphericity_bonded 10.761 r_rigid_bond_restr 4.883 r_dihedral_angle_1_deg 4.773 r_scbond_it 3.877 r_mcangle_it 3.098 r_mcbond_it 2.638 r_mcbond_other 2.638 r_angle_refined_deg 1.718 r_angle_other_deg 0.805 r_chiral_restr 0.095 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4225 Nucleic Acid Atoms Solvent Atoms 799 Heterogen Atoms
Software Software Software Name Purpose GDA data collection SHARP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling