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Crystal structure of double-helical CGG-repetitive RNA 19mer complexed with RSS p19
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 1.7 M ammonium sulfate, 0.1 M HEPES, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.72 54.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.926 α = 90 b = 90.926 β = 90 c = 147.791 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9834 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 94.5 0.061 16.6 3.1 13256
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 69.8 0.293 2.8 971
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 15 24052 1263 94.93 0.1818 0.1795 0.227 0.2793 RANDOM 48.8329
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 1.18 1.18 -3.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.178 r_dihedral_angle_4_deg 22.157 r_dihedral_angle_3_deg 14.184 r_dihedral_angle_1_deg 5.675 r_mcangle_it 5.184 r_mcbond_it 3.949 r_mcbond_other 3.931 r_angle_refined_deg 1.756 r_angle_other_deg 1.022 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.178 r_dihedral_angle_4_deg 22.157 r_dihedral_angle_3_deg 14.184 r_dihedral_angle_1_deg 5.675 r_mcangle_it 5.184 r_mcbond_it 3.949 r_mcbond_other 3.931 r_angle_refined_deg 1.756 r_angle_other_deg 1.022 r_chiral_restr 0.106 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1970 Nucleic Acid Atoms 834 Solvent Atoms 267 Heterogen Atoms 30
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction REFMAC phasing