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Structure of the L100F MUTANT OF DEHALOPEROXIDASE-HEMOGLOBIN A FROM AMPHITRITE ORNATA WITH 2,4,6-TRICHLOROPHENOL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 28-32% PEG4K, .2M ammonium sulfate, .02M sodium cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.18 43.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.539 α = 90 b = 67.804 β = 90 c = 68.368 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2012-06-09 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 50 98.3 0.054 14.8 6.7 50290 49456 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.46 72 0.54 3 1790
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.44 37.21 49937 49386 2502 98.9 0.204 0.1364 0.1331 0.1335 0.2014 0.2027 RANDOM 24.6427
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 -0.37 -0.13
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.825 r_dihedral_angle_2_deg 36.655 r_dihedral_angle_4_deg 17.053 r_sphericity_bonded 15.149 r_dihedral_angle_3_deg 14.944 r_rigid_bond_restr 5.072 r_dihedral_angle_1_deg 4.931 r_mcangle_it 4 r_mcbond_it 3.494 r_mcbond_other 3.491
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.825 r_dihedral_angle_2_deg 36.655 r_dihedral_angle_4_deg 17.053 r_sphericity_bonded 15.149 r_dihedral_angle_3_deg 14.944 r_rigid_bond_restr 5.072 r_dihedral_angle_1_deg 4.931 r_mcangle_it 4 r_mcbond_it 3.494 r_mcbond_other 3.491 r_angle_refined_deg 1.916 r_angle_other_deg 1.033 r_chiral_restr 0.171 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_gen_planes_other 0.006 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2186 Nucleic Acid Atoms Solvent Atoms 405 Heterogen Atoms 116
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection