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Crystal structure of PqsR co-inducer binding domain of Pseudomonas aeruginosa with inhibitor 3NH2-7Cl-C9QZN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 0.1M Tri sodium citrate pH 6.0, 0.1M Ammonium acetate, 3% MPD
, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 4.81 74.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.441 α = 90 b = 118.441 β = 90 c = 115.409 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r GRAPHITE 2010-12-16 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.976250 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 38.36 99.4 0.069 0.08 16 7.1 11633 11028 1 1 87.66
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.98 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 30 10483 528 99.2 0.20678 0.2041 0.2166 0.26285 0.2376 RANDOM 101.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.2 3.2 3.2 -10.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.056 r_dihedral_angle_3_deg 25.175 r_dihedral_angle_4_deg 14.208 r_dihedral_angle_1_deg 8.081 r_angle_refined_deg 2.029 r_chiral_restr 0.136 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1596 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 22
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement XDS data reduction SCALA data scaling