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Crystal structure of Tfu_1878, a putative enoyl-CoA hydratase from Thermobifida fusca YX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 0.05M Ammonium sulfate,
0.05M BisTris,
30% v/v Pentaerythritol ethoxylate (15/4 EO/OH)
, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.3 62.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.005 α = 90 b = 108.005 β = 90 c = 108.005 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Be Lenses/Diamond Laue Mono 2013-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97957 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 38.21 99.63 0.129 0.129 23.4 13.7 32884 32884 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.874 1.922 97.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.87 38.21 32884 32884 1734 99.63 0.14163 0.14163 0.14047 0.1401 0.164 0.1634 RANDOM 28.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.409 r_dihedral_angle_4_deg 21.751 r_dihedral_angle_3_deg 13.075 r_dihedral_angle_1_deg 5.935 r_angle_refined_deg 1.829 r_angle_other_deg 0.938 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.409 r_dihedral_angle_4_deg 21.751 r_dihedral_angle_3_deg 13.075 r_dihedral_angle_1_deg 5.935 r_angle_refined_deg 1.829 r_angle_other_deg 0.938 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1896 Nucleic Acid Atoms Solvent Atoms 336 Heterogen Atoms 10
Software Software Software Name Purpose HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing SHELXE model building BUCCANEER model building REFMAC refinement Coot model building FITMUNK refinement HKL-3000 data reduction HKL-3000 data scaling DM phasing BUCCANEER phasing