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Mmp13 in complex with a reverse hydroxamate Zn-binder
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 292 27.5% PEG 4000, 1.25M AmFormate, 100mM TrisHCl pH 8.5 , VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.27 45.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.616 α = 90 b = 36.13 β = 131.02 c = 95.755 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97910 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 54 95.9 62827 1.8 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.43 51.16 1.3 62597 3177 95.94 0.1525 0.1513 0.1755 0.1925 RANDOM 12.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 -0.21 0.01 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.241 r_dihedral_angle_4_deg 22.793 r_dihedral_angle_3_deg 11.148 r_dihedral_angle_1_deg 6.31 r_scangle_it 2.931 r_scbond_it 1.979 r_angle_refined_deg 1.476 r_mcangle_it 1.32 r_angle_other_deg 0.755 r_mcbond_it 0.736
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.241 r_dihedral_angle_4_deg 22.793 r_dihedral_angle_3_deg 11.148 r_dihedral_angle_1_deg 6.31 r_scangle_it 2.931 r_scbond_it 1.979 r_angle_refined_deg 1.476 r_mcangle_it 1.32 r_angle_other_deg 0.755 r_mcbond_it 0.736 r_symmetry_hbond_refined 0.235 r_symmetry_vdw_other 0.222 r_nbd_refined 0.213 r_nbtor_refined 0.204 r_mcbond_other 0.192 r_nbd_other 0.172 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.128 r_metal_ion_refined 0.092 r_nbtor_other 0.084 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2641 Nucleic Acid Atoms Solvent Atoms 495 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling AMoRE phasing