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Crystal structure of Cytochrome C Peroxidase W191G-Gateless in complex with 3-amino-1-methylpyridinium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 283 Apo crystal grown in 500mM MES, pH 6.0. Soaked into 50mM 3-amino-1-methylpyridinium, 25% MPD pH 4.5 (30min-1h), vapor diffusion, sitting drop, temperature 283K
Crystal Properties Matthews coefficient Solvent content 3.08 60.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.026 α = 90 b = 74.702 β = 90 c = 106.585 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2009-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 61.2 79143
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.41 29.16 79143 3976 99.28 0.1161 0.1149 0.1304 0.1391 0.1503 RANDOM 20.0436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.44 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.694 r_dihedral_angle_4_deg 26.329 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_1_deg 5.831 r_scangle_it 5.196 r_scbond_it 3.842 r_mcangle_it 2.57 r_mcbond_it 1.785 r_rigid_bond_restr 1.675 r_angle_refined_deg 1.672
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.694 r_dihedral_angle_4_deg 26.329 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_1_deg 5.831 r_scangle_it 5.196 r_scbond_it 3.842 r_mcangle_it 2.57 r_mcbond_it 1.785 r_rigid_bond_restr 1.675 r_angle_refined_deg 1.672 r_angle_other_deg 0.997 r_mcbond_other 0.642 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2328 Nucleic Acid Atoms Solvent Atoms 435 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SCALEPACK data scaling PHASER phasing